Through the NAMOS project, our team of biologists and engineers are assisting municipalities in understanding the underlying causes and effects of harmful microalgal blooms. Since early 2007, we have been studying system-level dynamics of the chemical, physical, and biological processes in King Harbor, a shallow, semi-enclosed urban harbor in Redondo Beach, California. For the last two years a network of dock-based water quality sensors in the harbor has continuously provided data on the environmental parameters relevant to bloom formation. Additionally, intensive human-mediated studies of the phytoplankton community distribution and structure are testing several hypotheses on the biological and physical factors affecting algal growth in this system. Recent field experiments have sought to explain the roles of tidal forcing and phytoplankton behavior and physiology in the structuring and distribution of bloom-forming algal communities.